atom feed9 messages in org.apache.marmotta.usersScaling Marmotta's LDP interface
FromSent OnAttachments
Mark BreedloveSep 18, 2015 12:37 pm 
Raffaele PalmieriSep 19, 2015 10:27 am 
Mark A. MatienzoSep 19, 2015 12:02 pm 
Sergio FernándezSep 22, 2015 12:22 am 
Mark BreedloveSep 23, 2015 3:53 pm 
Sergio FernándezSep 24, 2015 8:47 am 
Mark BreedloveSep 25, 2015 12:30 pm 
Mark BreedloveOct 2, 2015 12:46 pm 
Sergio FernándezOct 8, 2015 4:04 am 
Subject:Scaling Marmotta's LDP interface
From:Mark Breedlove (mb@dp.la)
Date:Sep 18, 2015 12:37:27 pm
List:org.apache.marmotta.users

Hello, Marmotta Users,

At the Digital Public Library of America, we have a large Marmotta triplestore, with which we interact entirely over LDP.

We're looking for some advice about scaling Marmotta's LDP interface past our current size. In the short term, we are hoping that we can find ways to tune PostgreSQL to mitigate some problems we have seen; in the long term, we are open to advice about alternate backends.

A high-level overview of how we interact with our LDP Resources is documented in [1]. While we have had to do some LDP-specific tuning (especially introducing a partial index on `triples.context`) for all processes, we have seen particular trouble in cases where we GET, transform, then PUT an LDP RDFSource (see: *Enrichment *in the overview link).

That overview is part of a greater wiki that we've put together to document our installation and performance-tuning activities [2].

Our biggest problem at the moment is addressing slow updates and inserts [3], observed when we GET and PUT those RDFSources with two concurrent mapping or enrichment activities. If we run one of these activities, GETing, transforming, and PUTing in serial, performance seems to be network and CPU bound, and is not very bad. But as soon as we run a second mapping or enrichment, work performed grinds practically to a halt, as described in [3].

To give you a sense of the scale at which we're operating, we have about two million LDP-RSs, typically including about 50 triples and a handful of blank nodes (around 5 to 15). Our `triples` table has about 294M rows now and takes up 32GB for the table, and 13GB each for its two largest indices. Our entire Marmotta database takes up about 140GB. We've had some successes with improving index performance with low cardinality in `triples.context` [4] and tuning the Amazon EC2 instances that we run on [5][6]. The I/O wait problem with concurrent LDP operations, however, is the new blocker.

Some supplemental information:

* An overview of the project for which Marmotta is being used: https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/Heidrun

* The application (a Rails engine) that makes all of these LDP requests: https://github.com/dpla/KriKri

* Our configuration-management project, with details on how some of our stack is configured: https://github.com/dpla/automation

We'd be grateful for any feedback that you might have that would assist us with handling large volumes of data over LDP. Thanks for your help!

[1] https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/LDP+Interactions+Overview [2] https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/Marmotta [3] https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/Addressing+slow+updates+and+inserts [4] https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/Index+performance+with+high+context+counts [5] https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/Amazon+EC2+adjustments [6] https://digitalpubliclibraryofamerica.atlassian.net/wiki/display/TECH/Using+irqbalance+and+SMP+IRQ+affinity